26 S proteasome of S. pombe - Filtering out false positive crosslinks
This page is the result of a DisVis run setup within the scope of the DisVis web server tutorial.
Your DisVis run has successfully completed.
|Archive of the complete run:||Tutorial1.tgz|
|Archive of all autogenerated images:||Tutorial1_images.tgz|
G.C.P. van Zundert and A.M.J.J. Bonvin (2015)
DisVis: Quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes.."
Bioinformatics 31, 3222-3224.
Note: Your results will be stored for 14 days before being removed from the server, please make a backup as soon as possible.
Questions / feedback ? ask.bioexcel.eu
Please also consider giving us some feedback by filling our online survey.
Accessible Interaction Space
The accessible interaction space consistent with at least N restraints is depicted below. Use the slider to adjust N and the arrows on the side of the images to change the view.
Current Level (N): 4
Images were generated with UCSF Chimera.
The table below lists the number of complexes consistent with at least N restraints as raw number and as fraction of all complexes.
|Number of consistent restraints (N)||Number of accessible complexes consistent with at least N restraints||Fraction of accessible complexes consistent with at least N restraints|
The table below features the z-Score for each restraint. The higher the score, the more likely the restraint is a false-positive. Z-scores above 1.0 are explicitly mentioned in the output of DisVis.
|#||Restraint||Average violated fraction||Standard deviation||Z-score|
The table below shows how often a specific restraint is violated for complexes consistent with a number of restraints. The higher the violation fraction of a specific restraint, the more likely it is to be a false-positive. Column 1 shows the number of consistent restraints N, while each following column indicates the violation fractions of a specific restraint for complexes consistent with at least N restraints. Each row thus represents the fraction of all complexes consistent with at least N restraints that violated a particular restraint.
|Number of consistent restraints (N)||Restraint 1||Restraint 2||Restraint 3||Restraint 4||Restraint 5||Restraint 6||Restraint 7||Restraint 8||Restraint 9|