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Your PRODIGY prediction (ExampleProdigy) has finished successfully.
Please note that the results will be deleted after two weeks.
To cite PRODIGY, please refer to:
- Vangone A. and Bonvin A.M.J.J. "Contact-based prediction of binding affinity in protein-protein complexes", eLife, 4, e07454 (2015).
- Xue L., Rodrigues J., Kastritis P., Bonvin A.M.J.J.*, Vangone A.*, "PRODIGY: a web-server for predicting the binding affinity in protein-protein complexes", Bioinformatics, doi:10.1093/bioinformatics/btw514 (2016).
For more information about the predictive model please check the PRODIGY prediction method page.
Further information can be found in the PRODIGY Manual and an example of the PRODIGY output can be found here.
Back to PRODIGY home page
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Binding affinity and Kd prediction
| Protein-protein complex | ΔG (kcal mol-1) | Kd (M) at 25.0 ℃ | ICs charged-charged | ICs charged-polar | ICs charged-apolar | ICs polar-polar | ICs polar-apolar | ICs apolar-apolar | NIS charged | NIS apolar |
|---|---|---|---|---|---|---|---|---|---|---|
| interactor1 | ||||||||||
| interactor2 | ||||||||||
| temperature | ||||||||||
| AA | ||||||||||
| ba_val | ||||||||||
| PP | ||||||||||
| CC | ||||||||||
| AC | ||||||||||
| AP | ||||||||||
| kd_val | ||||||||||
| nis_c | ||||||||||
| nis_a | ||||||||||
| ICs | ||||||||||
| CP | ||||||||||
| structures | ||||||||||
| pdb_id | ||||||||||
| tag | ||||||||||
| chains | ||||||||||
Download outputs
Archive file of all the outputs (.zip)
- interactor1
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- interactor2
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- temperature
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- AA
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- ba_val
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- PP
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- CC
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- AC
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- AP
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- kd_val
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- nis_c
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- nis_a
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- ICs
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- CP
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- structures
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- pdb_id
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- tag
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- chains
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
- - Residue-residue pairs (.ic)
- - PyMol ICs-based representation script (.pml)
- - PDB file (.pdb)
